Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs1824937 chr5:180317279 G/A 6.8E-6 1039 29.22 27.52 24.93 KM Plot
BRCA rs2137550 chr12:26230847 C/A 1.98E-7 1078 29.08 26.4 22.6 KM Plot
BRCA rs34372124 chr5:55514875 G/A 3.13E-6 1083 29.27 22.15 14.77 KM Plot
BRCA rs3803008 chr12:26147825 A/T 5.54E-8 1074 30.13 24.93 20.98 KM Plot
BRCA rs467954 chr2:114756238 A/C 1.33E-7 1087 26.87 31.43 17.35 KM Plot
BRCA rs4963953 chr12:26233294 C/A 2.37E-7 1074 29.08 26.4 22.6 KM Plot
BRCA rs6037030 chr20:25120101 C/T 2.75E-6 1082 28.72 30.13 15.67 KM Plot
BRCA rs6037031 chr20:25120118 A/T 2.77E-6 1081 28.83 30.13 15.67 KM Plot
BRCA rs6050351 chr20:25118271 C/T 2.05E-6 1078 28.57 30.5 16.47 KM Plot
BRCA rs60836137 chr12:26234921 G/A 3.97E-6 1072 29.08 26.5 21.97 KM Plot
BRCA rs61123975 chr12:26212321 T/C 4.16E-6 1058 28.63 26.4 23.63 KM Plot
BRCA rs7272141 chr20:25117199 A/C 2.03E-6 1079 28.53 30.5 16.47 KM Plot
BRCA rs73080925 chr12:26210906 G/T 4.2E-6 1057 28.63 26.5 23.63 KM Plot
BRCA rs73080984 chr12:26245347 C/T 3.02E-7 1064 29.08 26.4 22.6 KM Plot
CESC rs10010212 chr4:99021748 G/A 0 295 22.83 17.67 0.72 KM Plot